1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G204500.1

Sobic.002G204500.1


Description : EC_3.1 hydrolase acting on ester bond & phospholipase-D *(PLD-alpha)


Gene families : OG_42_0000199 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000199_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G204500.1
Cluster HCAA Clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
A4A49_02901 No alias phospholipase d beta 1 0.02 Orthogroups_2024-Update
Brara.A03108.1 No alias EC_3.1 hydrolase acting on ester bond & phospholipase-D... 0.02 Orthogroups_2024-Update
GRMZM2G108912 No alias phospholipase D delta 0.02 Orthogroups_2024-Update
Glyma.08G126700 No alias phospholipase D delta 0.04 Orthogroups_2024-Update
MA_947991g0010 No alias (q43007|plda1_orysa : 325.0) Phospholipase D alpha 1... 0.03 Orthogroups_2024-Update
Potri.018G131200 No alias phospholipase D alpha 2 0.03 Orthogroups_2024-Update
Pp1s2_353V6 No alias phospholipase d alpha 0.03 Orthogroups_2024-Update
Pp1s324_22V6 No alias phospholipase d 0.02 Orthogroups_2024-Update
Seita.4G222400.1 No alias EC_3.1 hydrolase acting on ester bond & phospholipase-D... 0.02 Orthogroups_2024-Update
Sopen02g012880 No alias Phospholipase D C terminal 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR025202 PLD-like_dom 656 699
IPR000008 C2_dom 24 142
IPR001736 PLipase_D/transphosphatidylase 347 381
IPR024632 PLipase_D_C 747 816
No external refs found!