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  5. Sobic.002G208301.1

Sobic.002G208301.1


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G208301.1
Cluster HCAA Clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
A4A49_23302 No alias glutamate receptor 3.1 0.03 Orthogroups_2024-Update
At5g48400 No alias Glutamate receptor 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV72] 0.03 Orthogroups_2024-Update
Bradi1g59600 No alias glutamate receptor 3.4 0.04 Orthogroups_2024-Update
Glyma.06G233600 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
HORVU5Hr1G010420.23 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU5Hr1G063420.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
LOC_Os02g02540 No alias glutamate receptor, putative, expressed 0.05 Orthogroups_2024-Update
MA_16378g0010 No alias (at2g32390 : 296.0) Encodes a ionotropic glutamate... 0.03 Orthogroups_2024-Update
PSME_00010771-RA No alias (at1g42540 : 809.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00020365-RA No alias (at2g29120 : 505.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00027643-RA No alias (at2g29120 : 565.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00032126-RA No alias (at4g35290 : 347.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00037074-RA No alias (at1g05200 : 98.6) member of Putative ligand-gated ion... 0.05 Orthogroups_2024-Update
PSME_00050642-RA No alias (q7xp59|glr31_orysa : 567.0) Glutamate receptor 3.1... 0.03 Orthogroups_2024-Update
Potri.001G374300 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.018G013200 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Sobic.002G208700.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Sobic.004G013200.2 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 796 820
IPR001828 ANF_lig-bd_rcpt 50 405
IPR001638 Solute-binding_3/MltF_N 490 795
No external refs found!