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  5. Sobic.002G208700.1

Sobic.002G208700.1


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G208700.1
Cluster HCAA Clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
A4A49_28967 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
At5g11180 No alias Glutamate receptor 2.6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN8] 0.03 Orthogroups_2024-Update
At5g27100 No alias Glutamate receptor 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O04660] 0.02 Orthogroups_2024-Update
Bradi1g26030 No alias glutamate receptor 3.4 0.03 Orthogroups_2024-Update
Bradi1g31350 No alias glutamate receptor 2.2 0.03 Orthogroups_2024-Update
Bradi1g59600 No alias glutamate receptor 3.4 0.02 Orthogroups_2024-Update
Bradi4g30850 No alias glutamate receptor 2.7 0.07 Orthogroups_2024-Update
Bradi4g30860 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Bradi4g30880 No alias glutamate receptor 2.7 0.08 Orthogroups_2024-Update
Brara.D01493.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
Brara.F03008.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Brara.J00340.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
GRMZM2G066489 No alias glutamate receptor 3.3 0.03 Orthogroups_2024-Update
GRMZM2G098301 No alias glutamate receptor 3.3 0.02 Orthogroups_2024-Update
Glyma.06G233900 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Glyma.09G197100 No alias glutamate receptor 3.6 0.03 Orthogroups_2024-Update
Glyma.11G087100 No alias glutamate receptor 3.6 0.02 Orthogroups_2024-Update
Glyma.13G272400 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
HORVU2Hr1G064530.8 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU5Hr1G010420.23 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
HORVU5Hr1G063420.2 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU6Hr1G009520.2 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
HORVU6Hr1G083570.16 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU7Hr1G031430.5 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU7Hr1G031680.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU7Hr1G081410.3 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
LOC_Os07g01310 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g26160 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10140272g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
MA_10426811g0010 No alias (at1g05200 : 243.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
MA_10430853g0010 No alias (at1g42540 : 532.0) member of Putative ligand-gated ion... 0.05 Orthogroups_2024-Update
MA_46902g0010 No alias (at1g05200 : 769.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
MA_958834g0010 No alias (at4g35290 : 358.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00000830-RA No alias (at2g29100 : 521.0) member of Putative ligand-gated ion... 0.05 Orthogroups_2024-Update
PSME_00000831-RA No alias (at4g35290 : 118.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00001098-RA No alias (at2g29120 : 637.0) member of Putative ligand-gated ion... 0.09 Orthogroups_2024-Update
PSME_00001291-RA No alias (at4g35290 : 534.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00001292-RA No alias (at4g35290 : 567.0) Encodes a putative glutamate... 0.04 Orthogroups_2024-Update
PSME_00005234-RA No alias (at1g05200 : 189.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00007782-RA No alias (at2g17260 : 247.0) Encodes a glutamate receptor.... 0.05 Orthogroups_2024-Update
PSME_00009649-RA No alias (at4g35290 : 475.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00010771-RA No alias (at1g42540 : 809.0) member of Putative ligand-gated ion... 0.06 Orthogroups_2024-Update
PSME_00020365-RA No alias (at2g29120 : 505.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00021963-RA No alias (at1g05200 : 294.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00023170-RA No alias (at1g42540 : 830.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00027643-RA No alias (at2g29120 : 565.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00027644-RA No alias (at2g29120 : 490.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00028975-RA No alias (at1g42540 : 174.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00032126-RA No alias (at4g35290 : 347.0) Encodes a putative glutamate... 0.04 Orthogroups_2024-Update
PSME_00032127-RA No alias (at4g35290 : 436.0) Encodes a putative glutamate... 0.04 Orthogroups_2024-Update
PSME_00037074-RA No alias (at1g05200 : 98.6) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00040281-RA No alias (at2g29120 : 550.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00045289-RA No alias (at2g17260 : 248.0) Encodes a glutamate receptor.... 0.03 Orthogroups_2024-Update
PSME_00050642-RA No alias (q7xp59|glr31_orysa : 567.0) Glutamate receptor 3.1... 0.03 Orthogroups_2024-Update
PSME_00051451-RA No alias (q7xp59|glr31_orysa : 474.0) Glutamate receptor 3.1... 0.03 Orthogroups_2024-Update
Potri.001G374300 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.011G062750 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Potri.011G062900 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.018G009800 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Potri.018G011650 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.018G011800 No alias glutamate receptor 2.8 0.06 Orthogroups_2024-Update
Potri.018G012300 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Potri.018G096500 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Seita.1G009400.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Seita.1G345900.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Seita.1G346100.1 No alias ligand-gated cation channel *(GLR) 0.05 Orthogroups_2024-Update
Seita.2G212900.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Sobic.002G208301.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Sobic.002G208800.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.010G068600.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Solyc06g063210 No alias glutamate receptor-like 2.5 0.03 Orthogroups_2024-Update
Sopen06g022660 No alias Receptor family ligand binding region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 807 835
IPR001828 ANF_lig-bd_rcpt 51 400
IPR001638 Solute-binding_3/MltF_N 484 806
No external refs found!