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  5. Sobic.002G209100.1

Sobic.002G209100.1


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G209100.1
Cluster HCAA Clusters: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
At3g51480 No alias Glutamate receptor 3.6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W41] 0.03 Orthogroups_2024-Update
Bradi1g26030 No alias glutamate receptor 3.4 0.02 Orthogroups_2024-Update
Bradi1g31350 No alias glutamate receptor 2.2 0.04 Orthogroups_2024-Update
Bradi1g46947 No alias glutamate receptor 2.5 0.04 Orthogroups_2024-Update
Bradi4g30850 No alias glutamate receptor 2.7 0.05 Orthogroups_2024-Update
Bradi4g30860 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Bradi4g30880 No alias glutamate receptor 2.7 0.06 Orthogroups_2024-Update
Brara.F03008.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Glyma.06G233900 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Glyma.13G172100 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Glyma.13G233000 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Glyma.13G233400 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
HORVU2Hr1G064530.8 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU5Hr1G010420.23 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU5Hr1G063540.6 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU6Hr1G083570.16 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU6Hr1G083680.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
LOC_Os06g06130 No alias glutamate receptor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g08880 No alias glutamate receptor 2.7 precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10140272g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10426811g0010 No alias (at1g05200 : 243.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
MA_10430853g0010 No alias (at1g42540 : 532.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00000830-RA No alias (at2g29100 : 521.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00001098-RA No alias (at2g29120 : 637.0) member of Putative ligand-gated ion... 0.08 Orthogroups_2024-Update
PSME_00001292-RA No alias (at4g35290 : 567.0) Encodes a putative glutamate... 0.06 Orthogroups_2024-Update
PSME_00007782-RA No alias (at2g17260 : 247.0) Encodes a glutamate receptor.... 0.07 Orthogroups_2024-Update
PSME_00009649-RA No alias (at4g35290 : 475.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00010771-RA No alias (at1g42540 : 809.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00021963-RA No alias (at1g05200 : 294.0) member of Putative ligand-gated ion... 0.06 Orthogroups_2024-Update
PSME_00023170-RA No alias (at1g42540 : 830.0) member of Putative ligand-gated ion... 0.05 Orthogroups_2024-Update
PSME_00027643-RA No alias (at2g29120 : 565.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00027644-RA No alias (at2g29120 : 490.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00037073-RA No alias (at2g17260 : 246.0) Encodes a glutamate receptor.... 0.03 Orthogroups_2024-Update
PSME_00037074-RA No alias (at1g05200 : 98.6) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00040281-RA No alias (at2g29120 : 550.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
Potri.007G044000 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Potri.011G062750 No alias glutamate receptor 2.7 0.06 Orthogroups_2024-Update
Potri.014G028500 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Pp1s56_31V6 No alias glutamate-gated kainate-type ion channel receptor subunit 5 0.02 Orthogroups_2024-Update
Seita.1G009400.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Seita.1G346100.1 No alias ligand-gated cation channel *(GLR) 0.07 Orthogroups_2024-Update
Seita.2G212900.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.004G013200.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.004G324000.1 No alias ligand-gated cation channel *(GLR) 0.05 Orthogroups_2024-Update
Sobic.010G068600.1 No alias ligand-gated cation channel *(GLR) 0.05 Orthogroups_2024-Update
Solyc07g052400 No alias glutamate receptor-like 3.2 0.03 Orthogroups_2024-Update
Sopen02g027170 No alias Receptor family ligand binding region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005795 Golgi stack IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0031984 organelle subcompartment IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098791 Golgi subcompartment IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 806 836
IPR001828 ANF_lig-bd_rcpt 55 403
IPR001638 Solute-binding_3/MltF_N 494 805
No external refs found!