1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G210200.1

Sobic.002G210200.1


Description : histone *(H2B)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G210200.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
At2g28720 No alias Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96] 0.03 Orthogroups_2024-Update
At3g45980 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6] 0.03 Orthogroups_2024-Update
Bradi2g23230 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G071959 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G066130.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU1Hr1G078480.6 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU3Hr1G013680.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU4Hr1G009040.2 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
MA_10434433g0010 No alias (at3g45980 : 175.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
Potri.008G030550 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G230801 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G216500.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Seita.5G375500.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
evm.model.contig_498.4 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004363 glutathione synthase activity IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0005986 sucrose biosynthetic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
MF GO:0019203 carbohydrate phosphatase activity IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050307 sucrose-phosphate phosphatase activity IEP Predicted GO
MF GO:0050308 sugar-phosphatase activity IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 129
No external refs found!