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  5. Sobic.002G210700.1

Sobic.002G210700.1


Description : EC_3.1 hydrolase acting on ester bond & pectin methylesterase


Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G210700.1
Cluster HCAA Clusters: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
101118 No alias pectin methylesterase PCR fragment F 0.06 Orthogroups_2024-Update
At1g11580 No alias methylesterase PCR A [Source:TAIR;Acc:AT1G11580] 0.03 Orthogroups_2024-Update
At1g23200 No alias Probable pectinesterase/pectinesterase inhibitor 6... 0.02 Orthogroups_2024-Update
At1g53830 No alias Pectinesterase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42534] 0.06 Orthogroups_2024-Update
At4g02320 No alias Pectinesterase [Source:UniProtKB/TrEMBL;Acc:A0A178V0A5] 0.04 Orthogroups_2024-Update
At5g49180 No alias Pectinesterase [Source:UniProtKB/TrEMBL;Acc:A0A178UKT8] 0.03 Orthogroups_2024-Update
Brara.A02188.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.E00332.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
Brara.H01111.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.I03256.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
GRMZM2G025182 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Orthogroups_2024-Update
GRMZM2G043415 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.01G137700 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.02G008400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Glyma.03G029100 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.04G236200 No alias pectin methylesterase PCR fragment F 0.03 Orthogroups_2024-Update
Glyma.14G159600 No alias pectin methylesterase PCR fragment F 0.02 Orthogroups_2024-Update
Glyma.15G183700 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
HORVU6Hr1G084030.3 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.03 Orthogroups_2024-Update
LOC_Os06g09340 No alias pectinesterase, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os08g34910 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
MA_10435891g0010 No alias (o04887|pme2_citsi : 389.0) Pectinesterase-2 precursor... 0.03 Orthogroups_2024-Update
MA_8928694g0010 No alias (at3g43270 : 214.0) Plant invertase/pectin... 0.02 Orthogroups_2024-Update
PSME_00038370-RA No alias (o04887|pme2_citsi : 476.0) Pectinesterase-2 precursor... 0.02 Orthogroups_2024-Update
Seita.1G129700.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.05 Orthogroups_2024-Update
Sopen07g006400 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA 16Dec
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 314 611
IPR006501 Pectinesterase_inhib_dom 105 248
No external refs found!