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  5. At3g47370

At3g47370


Description : 40S ribosomal protein S20-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9STY6]


Gene families : OG_42_0001666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001666_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g47370
Cluster HCCA clusters: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
115495 No alias Ribosomal protein S10p/S20e family protein 0.05 Orthogroups_2024-Update
A4A49_09412 No alias 40s ribosomal protein s20-2 0.04 Orthogroups_2024-Update
Bradi1g51650 No alias Ribosomal protein S10p/S20e family protein 0.08 Orthogroups_2024-Update
Brara.B01551.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.C01470.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.I00689.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.J00726.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Cre16.g660150 No alias Ribosomal protein S10p/S20e family protein 0.05 Orthogroups_2024-Update
Glyma.03G142200 No alias Ribosomal protein S10p/S20e family protein 0.03 Orthogroups_2024-Update
Glyma.19G145000 No alias Ribosomal protein S10p/S20e family protein 0.04 Orthogroups_2024-Update
Glyma.19G145100 No alias Ribosomal protein S10p/S20e family protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G028050.5 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
LOC_Os06g04290 No alias S10/S20 domain containing ribosomal protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.03 Orthogroups_2024-Update
PSME_00007666-RA No alias (at5g62300 : 193.0) Ribosomal protein S10p/S20e family... 0.03 Orthogroups_2024-Update
Potri.012G128300 No alias Ribosomal protein S10p/S20e family protein 0.06 Orthogroups_2024-Update
Pp1s257_105V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s271_9V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Seita.4G023300.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Seita.9G468800.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.001G436200.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.010G023900.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Solyc01g096580 No alias ribosomal protein S10p/S20e family protein 0.07 Orthogroups_2024-Update
Solyc01g096590 No alias ribosomal protein S10p/S20e family protein 0.06 Orthogroups_2024-Update
Sopen00g005650 No alias Ribosomal protein S10p/S20e 0.06 Orthogroups_2024-Update
Sopen00g005660 No alias Ribosomal protein S10p/S20e 0.06 Orthogroups_2024-Update
Sopen01g040310 No alias Ribosomal protein S10p/S20e 0.06 Orthogroups_2024-Update
Sopen01g040320 No alias Ribosomal protein S10p/S20e 0.07 Orthogroups_2024-Update
evm.model.contig_560.7 No alias (at3g47370 : 151.0) Ribosomal protein S10p/S20e family... 0.07 Orthogroups_2024-Update
evm.model.tig00000842.28 No alias (p35686|rs20_orysa : 147.0) 40S ribosomal protein S20 -... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
CC GO:1902495 transmembrane transporter complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
CC GO:1990351 transporter complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 24 118
No external refs found!