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  5. Sobic.002G230000.1

Sobic.002G230000.1


Description : bHLH-type transcription factor


Gene families : OG_42_0000444 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000444_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G230000.1
Cluster HCAA Clusters: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
At1g68810 No alias Transcription factor bHLH30... 0.02 Orthogroups_2024-Update
Glyma.13G291400 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G018680.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Potri.002G105300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G065500 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G235400.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Seita.6G184600.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Seita.7G273100.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.007G159300.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Solyc05g009880 No alias bHLH transcription factor 038 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 32 78
No external refs found!