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  5. Sobic.002G233000.1

Sobic.002G233000.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G233000.1
Cluster HCAA Clusters: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
A4A49_04094 No alias ring-h2 finger protein atl51 0.06 Orthogroups_2024-Update
A4A49_36900 No alias putative ring-h2 finger protein atl37 0.02 Orthogroups_2024-Update
Brara.C01887.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G069980.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.09 Orthogroups_2024-Update
HORVU5Hr1G079910.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g11490 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g44636 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g07140 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g42530 No alias expressed protein 0.02 Orthogroups_2024-Update
PSME_00003022-RA No alias (at1g72200 : 164.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Seita.2G237900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.3G302000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.5G368500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc11g007530 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061DVK5_THECC) 0.04 Orthogroups_2024-Update
Sopen12g029900 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 165 208
No external refs found!