1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G249500.2

Sobic.002G249500.2


Description : small subunit of U2AF pre-RNA splicing auxiliary factor complex


Gene families : OG_42_0001056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G249500.2
Cluster HCAA Clusters: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
A4A49_10283 No alias splicing factor u2af small subunit a 0.04 Orthogroups_2024-Update
Brara.G00834.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Orthogroups_2024-Update
GRMZM2G177229 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.05 Orthogroups_2024-Update
Glyma.12G181300 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.07 Orthogroups_2024-Update
HORVU5Hr1G073680.3 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Orthogroups_2024-Update
LOC_Os09g31482 No alias splicing factor U2AF, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00027172-RA No alias (at5g42820 : 293.0) U2 auxiliary factor small subunit.... 0.05 Orthogroups_2024-Update
Seita.6G010500.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0046872 metal ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 14 38
IPR000571 Znf_CCCH 150 173
IPR000504 RRM_dom 83 139
No external refs found!