Sobic.002G258000.1

Description : regulatory protein *(SEPALLATA) of floral meristem identity control & MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.002G258000.1
Cluster	HCAA Clusters: Cluster_275

Target	Alias	Description	ECC score	Gene Family Method
A4A49_15806	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_22632	No alias	floral homeotic protein agamous	0.03	Orthogroups_2024-Update
At2g45650	No alias	AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]	0.02	Orthogroups_2024-Update
Brara.B03396.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I02486.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G171365	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.05G163200	No alias	K-box region and MADS-box transcription factor family protein	0.01	Orthogroups_2024-Update
Glyma.07G081300	No alias	AGAMOUS-like 6	0.02	Orthogroups_2024-Update
Glyma.08G250800	No alias	AGAMOUS-like 8	0.03	Orthogroups_2024-Update
Glyma.08G282500	No alias	AGAMOUS-like 29	0.03	Orthogroups_2024-Update
HORVU3Hr1G095090.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
HORVU6Hr1G066140.9	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
LOC_Os02g06860	No alias	OsMADS80 - MADS-box family gene with M-alpha type-box, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g23950	No alias	OsMADS59 - MADS-box family gene with MIKCc type-box	0.03	Orthogroups_2024-Update
LOC_Os06g30830	No alias	OsMADS76 - MADS-box family gene with M-alpha type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os12g31748	No alias	OsMADS20 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
Potri.001G058400	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.001G284301	No alias	AGAMOUS-like 21	0.02	Orthogroups_2024-Update
Potri.004G131100	No alias	AGAMOUS-like 29	0.02	Orthogroups_2024-Update
Potri.005G182200	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Seita.1G209300.1	No alias	MADS/AGL-type transcription factor	0.01	Orthogroups_2024-Update
Seita.1G273400.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Seita.3G280400.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Seita.6G194800.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Solyc01g105800	No alias	MADS box transcription factor (AHRD V1 **--...	0.02	Orthogroups_2024-Update
Solyc04g078300	No alias	MADS-box transcription factor family protein (AHRD V3.3...	0.02	Orthogroups_2024-Update
Sopen01g045900	No alias	SRF-type transcription factor (DNA-binding and...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0010181	FMN binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	87	175
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Sobic.002G258000.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation