1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G273300.1

Sobic.002G273300.1


Description : BBX class-IV transcription factor


Gene families : OG_42_0004045 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004045_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G273300.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
111647 No alias B-box type zinc finger family protein 0.05 Orthogroups_2024-Update
A4A49_04905 No alias b-box zinc finger protein 19 0.04 Orthogroups_2024-Update
At2g21320 No alias B-box zinc finger protein 18... 0.03 Orthogroups_2024-Update
At4g38960 No alias B-box type zinc finger family protein... 0.05 Orthogroups_2024-Update
Bradi4g35950 No alias B-box type zinc finger family protein 0.06 Orthogroups_2024-Update
Brara.H01834.1 No alias BBX class-IV transcription factor 0.03 Orthogroups_2024-Update
Brara.I04651.1 No alias BBX class-IV transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G143718 No alias B-box type zinc finger family protein 0.06 Orthogroups_2024-Update
Glyma.01G168500 No alias B-box type zinc finger family protein 0.05 Orthogroups_2024-Update
Glyma.11G074900 No alias B-box type zinc finger family protein 0.05 Orthogroups_2024-Update
Glyma.11G110900 No alias B-box type zinc finger family protein 0.05 Orthogroups_2024-Update
Glyma.12G037200 No alias B-box type zinc finger family protein 0.07 Orthogroups_2024-Update
HORVU5Hr1G081190.1 No alias BBX class-IV transcription factor 0.04 Orthogroups_2024-Update
LOC_Os09g35880 No alias B-box zinc finger family protein, putative, expressed 0.04 Orthogroups_2024-Update
Potri.005G117100 No alias B-box zinc finger family protein 0.05 Orthogroups_2024-Update
Potri.009G124400 No alias B-box type zinc finger family protein 0.03 Orthogroups_2024-Update
Pp1s207_121V6 No alias F3K23.8; zinc finger (B-box type) family protein... 0.05 Orthogroups_2024-Update
Seita.2G284200.1 No alias BBX class-IV transcription factor 0.08 Orthogroups_2024-Update
Solyc01g110370 No alias Zinc finger, B-box (AHRD V3.3 *** A0A118K2C5_CYNCS) 0.04 Orthogroups_2024-Update
Solyc02g084420 No alias B-box zinc finger family protein (AHRD V3.3 *** AT2G21320.1) 0.04 Orthogroups_2024-Update
Sopen01g052520 No alias B-box zinc finger 0.03 Orthogroups_2024-Update
Sopen02g029130 No alias B-box zinc finger 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000315 Znf_B-box 52 91
IPR000315 Znf_B-box 3 42
No external refs found!