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  5. Sobic.002G274500.1

Sobic.002G274500.1


Description : SRS-type transcription factor


Gene families : OG_42_0000655 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000655_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G274500.1
Cluster HCAA Clusters: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
At3g54430 No alias Protein SHI RELATED SEQUENCE 6... 0.03 Orthogroups_2024-Update
Brara.D00469.1 No alias SRS-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.02G051900 No alias Lateral root primordium (LRP) protein-related 0.03 Orthogroups_2024-Update
Glyma.02G280000 No alias Lateral root primordium (LRP) protein-related 0.03 Orthogroups_2024-Update
Glyma.16G132100 No alias SHI-related sequence 7 0.04 Orthogroups_2024-Update
Glyma.20G037100 No alias Lateral root primordium (LRP) protein-related 0.04 Orthogroups_2024-Update
LOC_Os08g43410 No alias LRP1, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00049085-RA No alias (at5g12330 : 151.0) A member of SHI gene family.... 0.04 Orthogroups_2024-Update
Potri.001G027700 No alias Lateral root primordium (LRP) protein-related 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!