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  5. Sobic.002G280700.1

Sobic.002G280700.1


Description : component *(CAF1c/MSI) of CAF1 histone chaperone complex & component *(MSI3) of ISWI chromatin remodeling complex


Gene families : OG_42_0002428 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002428_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G280700.1
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Bradi4g36580 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.I01007.1 No alias component *(CAF1c/MSI) of CAF1 histone chaperone complex... 0.03 Orthogroups_2024-Update
Cre12.g523200 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G091500 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Glyma.12G033100 No alias Transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
Seita.2G291200.1 No alias component *(CAF1c/MSI) of CAF1 histone chaperone complex... 0.06 Orthogroups_2024-Update
Seita.9G159200.1 No alias component *(MSI1) of PRC2 histone methylation complex &... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000725 recombinational repair IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 23 87
IPR001680 WD40_repeat 294 331
IPR001680 WD40_repeat 250 287
IPR001680 WD40_repeat 352 387
IPR001680 WD40_repeat 181 195
No external refs found!