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  5. Sobic.002G281600.1

Sobic.002G281600.1


Description : component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent RNase P complex


Gene families : OG_42_0000903 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G281600.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
At1g20220 No alias Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q944A2] 0.03 Orthogroups_2024-Update
Brara.H02335.1 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.1 Orthogroups_2024-Update
GRMZM2G065669 No alias Alba DNA/RNA-binding protein 0.02 Orthogroups_2024-Update
GRMZM2G164088 No alias Alba DNA/RNA-binding protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G011020.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G074450.3 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G084510.3 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.05 Orthogroups_2024-Update
Seita.2G292300.1 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.03 Orthogroups_2024-Update
Seita.9G528100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc06g083540 No alias Alba DNA/RNA-binding protein (AHRD V3.3 *-* AT3G07030.5) 0.08 Orthogroups_2024-Update
Solyc09g061710 No alias Alba DNA/RNA-binding protein (AHRD V3.3 *-* AT3G07030.5) 0.03 Orthogroups_2024-Update
Sopen06g034920 No alias Alba 0.02 Orthogroups_2024-Update
Sopen09g024700 No alias Alba 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0019362 pyridine nucleotide metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0072524 pyridine-containing compound metabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 19 83
No external refs found!