Sobic.002G292500.1

Description : component *(eL40) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.002G292500.1
Cluster	HCAA Clusters: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method	Actions
163447	No alias	ubiquitin 4	0.02	Orthogroups_2024-Update
173723	No alias	polyubiquitin 10	0.03	Orthogroups_2024-Update
228943	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
271198	No alias	polyubiquitin 10	0.03	Orthogroups_2024-Update
Bradi1g32700	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Bradi1g32860	No alias	polyubiquitin 10	0.03	Orthogroups_2024-Update
Bradi2g34750	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Bradi3g03957	No alias	polyubiquitin 3	0.04	Orthogroups_2024-Update
Bradi3g04730	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
GRMZM2G005461	No alias	ubiquitin 9	0.03	Orthogroups_2024-Update
Glyma.10G051100	No alias	ubiquitin 4	0.04	Orthogroups_2024-Update
Glyma.13G138600	No alias	ubiquitin 4	0.06	Orthogroups_2024-Update
HORVU6Hr1G026200.5	No alias	UBQ ubiquitin-fold protein	0.03	Orthogroups_2024-Update
HORVU6Hr1G026280.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU7Hr1G107010.1	No alias	UBQ ubiquitin-fold protein	0.02	Orthogroups_2024-Update
LOC_Os05g42424	No alias	ubiquitin family protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_100402g0010	No alias	(at4g02890 : 582.0) Polyubiquitin gene containing 4...	0.03	Orthogroups_2024-Update
MA_13121g0010	No alias	(at5g03240 : 264.0) encodes ubiquitin that is attached...	0.03	Orthogroups_2024-Update
MA_371071g0010	No alias	(at5g03240 : 517.0) encodes ubiquitin that is attached...	0.02	Orthogroups_2024-Update
MA_41251g0030	No alias	(at4g05320 : 844.0) One of five polyubiquitin genes in...	0.03	Orthogroups_2024-Update
MA_9420337g0010	No alias	(at5g03240 : 357.0) encodes ubiquitin that is attached...	0.03	Orthogroups_2024-Update
Mp4g02740.1	No alias	ubiquitin-fold protein (UBQ)	0.02	Orthogroups_2024-Update
Mp6g03960.1	No alias	ubiquitin-fold protein (UBQ)	0.02	Orthogroups_2024-Update
Potri.017G135600	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Pp1s175_73V6	No alias	polyubiquitin	0.04	Orthogroups_2024-Update
Pp1s351_6V6	No alias	polyubiquitin containing 7 ubiquitin monomers	0.04	Orthogroups_2024-Update
Pp1s72_104V6	No alias	polyubiquitin	0.01	Orthogroups_2024-Update	oggle="tooltip" data-placement="top" title="View cluster as table">
Seita.1G078800.1	No alias	UBQ ubiquitin-fold protein	0.03	Orthogroups_2024-Update
Seita.1G086300.1	No alias	UBQ ubiquitin-fold protein	0.03	Orthogroups_2024-Update
Seita.2G207500.1	No alias	RUB ubiquitin-fold protein	0.04	Orthogroups_2024-Update
Seita.3G398300.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.4G253400.1	No alias	UBQ ubiquitin-fold protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001671	ATPase activator activity	IEP	Predicted GO
MF	GO:0004089	carbonate dehydratase activity	IEP	Predicted GO
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Predicted GO
BP	GO:0009690	cytokinin metabolic process	IEP	Predicted GO
BP	GO:0010817	regulation of hormone levels	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
BP	GO:0034754	cellular hormone metabolic process	IEP	Predicted GO
BP	GO:0042255	ribosome assembly	IEP	Predicted GO
BP	GO:0042256	mature ribosome assembly	IEP	Predicted GO
BP	GO:0042445	hormone metabolic process	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051259	protein complex oligomerization	IEP	Predicted GO
BP	GO:0051260	protein homooligomerization	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0070925	organelle assembly	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001975	Ribosomal_L40e	85	133
IPR000626	Ubiquitin_dom	3	74

External Links

No external refs found!

Sobic.002G292500.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation