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  5. Sobic.002G308900.1

Sobic.002G308900.1


Description : component *(eL40) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G308900.1
Cluster HCAA Clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
228943 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
HORVU3Hr1G014150.2 No alias RUB ubiquitin-fold protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G014180.3 No alias RUB ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Kfl00013_0180 kfl00013_0180_v1.... (at5g03240 : 138.0) encodes ubiquitin that is attached... 0.01 Orthogroups_2024-Update
MA_9129425g0010 No alias (at3g52590 : 191.0) Ubiquitin extension protein;... 0.03 Orthogroups_2024-Update
Seita.4G259900.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Sobic.005G099100.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen10g002430 No alias Ubiquitin family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0004097 catechol oxidase activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 90 135
IPR000626 Ubiquitin_dom 3 74
No external refs found!