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  5. Sobic.002G312300.1

Sobic.002G312300.1


Description : SBP-type transcription factor


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G312300.1
Cluster HCAA Clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G307588 No alias squamosa promoter binding protein-like 9 0.03 Orthogroups_2024-Update
Glyma.13G237400 No alias squamosa promoter binding protein-like 3 0.03 Orthogroups_2024-Update
Glyma.16G054500 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 117 190
No external refs found!