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  5. Sobic.002G316600.1

Sobic.002G316600.1


Description : FRS/FRF-type transcription factor


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G316600.1
Cluster HCAA Clusters: Cluster_331

Target Alias Description ECC score Gene Family Method Actions
At1g52520 No alias Protein FAR1-RELATED SEQUENCE 6... 0.03 Orthogroups_2024-Update
At3g22170 No alias FHY3 [Source:UniProtKB/TrEMBL;Acc:A0A178VJL5] 0.03 Orthogroups_2024-Update
Bradi1g13310 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Bradi2g37795 No alias FAR1-related sequence 5 0.06 Orthogroups_2024-Update
Brara.C02441.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G034868 No alias FRS (FAR1 Related Sequences) transcription factor family 0.03 Orthogroups_2024-Update
Glyma.06G314300 No alias far-red elongated hypocotyls 3 0.03 Orthogroups_2024-Update
Glyma.09G039300 No alias FAR1-related sequence 11 0.04 Orthogroups_2024-Update
HORVU0Hr1G039600.3 No alias FRS/FRF-type transcription factor 0.05 Orthogroups_2024-Update
HORVU2Hr1G040290.3 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G010730.2 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Potri.001G201600 No alias FAR1-related sequence 6 0.02 Orthogroups_2024-Update
Potri.016G059200 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Seita.7G295500.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Sopen06g030080 No alias MULE transposase domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 544 575
IPR018289 MULE_transposase_dom 261 354
IPR004330 FAR1_DNA_bnd_dom 54 140
No external refs found!