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  5. Sobic.002G329900.1

Sobic.002G329900.1


Description : histone *(H2A)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G329900.1
Cluster HCAA Clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Brara.J01356.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
GRMZM2G107540 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
HORVU7Hr1G112470.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
LOC_Os07g36140 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g34510 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_3822944g0010 No alias (p50567|h2a_chlre : 97.1) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
MA_427046g0010 No alias (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... 0.03 Orthogroups_2024-Update
MA_93628g0020 No alias (q2hu68|h2a1_medtr : 174.0) Probable histone H2A.1 -... 0.03 Orthogroups_2024-Update
Potri.013G028900 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
Sopen12g001250 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 93 126
IPR007125 Histone_H2A/H2B/H3 14 90
No external refs found!