1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G338000.1

Sobic.002G338000.1


Description : component *(LHCb4) of LHC-II complex


Gene families : OG_42_0004123 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004123_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G338000.1
Cluster HCAA Clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
At3g08940 No alias Chlorophyll a-b binding protein CP29.2, chloroplastic... 0.08 Orthogroups_2024-Update
Bradi1g24870 No alias light harvesting complex photosystem II 0.09 Orthogroups_2024-Update
Brara.B00018.1 No alias component *(LHCb4) of LHC-II complex 0.05 Orthogroups_2024-Update
Brara.E03123.1 No alias component *(LHCb4) of LHC-II complex 0.09 Orthogroups_2024-Update
Cre17.g720250 No alias light harvesting complex photosystem II 0.05 Orthogroups_2024-Update
Glyma.01G115900 No alias light harvesting complex photosystem II 0.07 Orthogroups_2024-Update
Glyma.03G060300 No alias light harvesting complex photosystem II 0.11 Orthogroups_2024-Update
HORVU2Hr1G041270.2 No alias Unknown function 0.06 Orthogroups_2024-Update
HORVU2Hr1G041280.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Kfl00258_0020 kfl00258_0020_v1.1 (at5g01530 : 324.0) light harvesting complex photosystem... 0.08 Orthogroups_2024-Update
LOC_Os07g37240 No alias chlorophyll A-B binding protein, putative, expressed 0.07 Orthogroups_2024-Update
MA_129206g0010 No alias (at2g40100 : 288.0) Lhcb4:3 protein (Lhcb4.3, light... 0.03 Orthogroups_2024-Update
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.05 Orthogroups_2024-Update
PSME_00005803-RA No alias (at3g08940 : 324.0) Lhcb4.2 protein (Lhcb4.2, protein... 0.06 Orthogroups_2024-Update
Potri.006G099500 No alias light harvesting complex photosystem II 0.02 Orthogroups_2024-Update
Pp1s155_34V6 No alias chlorophyll a b binding 0.02 Orthogroups_2024-Update
Pp1s472_15V6 No alias chlorophyll a b binding 0.05 Orthogroups_2024-Update
Seita.2G351600.1 No alias component *(LHCb4) of LHC-II complex 0.1 Orthogroups_2024-Update
Solyc09g014520 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.09 Orthogroups_2024-Update
Sopen09g007360 No alias Chlorophyll A-B binding protein 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0010206 photosystem II repair IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0030091 protein repair IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 61 257
No external refs found!