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  5. Sobic.002G353700.1

Sobic.002G353700.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G353700.1
Cluster HCAA Clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
A4A49_19698 No alias protein indeterminate-domain 11 0.02 Orthogroups_2024-Update
A4A49_22472 No alias zinc finger protein jackdaw 0.02 Orthogroups_2024-Update
Bradi1g18370 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Brara.I02048.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G027333 No alias indeterminate(ID)-domain 11 0.02 Orthogroups_2024-Update
GRMZM2G171073 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.01G176600 No alias C2H2-like zinc finger protein 0.05 Orthogroups_2024-Update
HORVU4Hr1G070950.3 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Pp1s218_34V6 No alias nucleic acid binding 0.03 Orthogroups_2024-Update
Seita.2G368500.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Seita.6G247000.1 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
Solyc03g121660 No alias Zinc finger family protein (AHRD V3.3 *** D7MN23_ARALL) 0.02 Orthogroups_2024-Update
Sopen10g033630 No alias Zinc finger, C2H2 type 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!