Sobic.002G355000.1

Description : WRKY-type transcription factor

Gene families : OG_42_0000005 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.002G355000.1
Cluster	HCAA Clusters: Cluster_69

Target	Alias	Description	ECC score	Gene Family Method
77979	No alias	WRKY DNA-binding protein 35	0.04	Orthogroups_2024-Update
Bradi1g23340	No alias	WRKY family transcription factor family protein	0.02	Orthogroups_2024-Update
Bradi1g63910	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
Bradi4g06690	No alias	WRKY DNA-binding protein 4	0.04	Orthogroups_2024-Update
GRMZM2G083350	No alias	WRKY DNA-binding protein 72	0.03	Orthogroups_2024-Update
HORVU0Hr1G003340.8	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
LOC_Os05g46020	No alias	WRKY7, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g05380	No alias	WRKY73, expressed	0.02	Orthogroups_2024-Update
MA_16118g0010	No alias	(at5g56270 : 324.0) WRKY transcription factor 2; WRKY...	0.03	Orthogroups_2024-Update
PSME_00001545-RA	No alias	(at1g29860 : 137.0) member of WRKY Transcription Factor;...	0.02	Orthogroups_2024-Update
Seita.9G359600.1	No alias	WRKY-type transcription factor	0.08	Orthogroups_2024-Update
Solyc03g104810	No alias	WRKY transcription factor 5	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0003774	motor activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
CC	GO:0044430	cytoskeletal part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	404	461
IPR003657	WRKY_dom	230	286

External Links

No external refs found!

Sobic.002G355000.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation