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  5. Sobic.002G364500.1

Sobic.002G364500.1


Description : component *(eS1) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G364500.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
271906 No alias Ribosomal protein S3Ae 0.04 Orthogroups_2024-Update
271907 No alias Ribosomal protein S3Ae 0.04 Orthogroups_2024-Update
A4A49_56002 No alias 40s ribosomal protein s3a 0.12 Orthogroups_2024-Update
At3g04840 No alias 40S ribosomal protein S3a-1... 0.05 Orthogroups_2024-Update
Bradi1g71200 No alias Ribosomal protein S3Ae 0.11 Orthogroups_2024-Update
Bradi1g78170 No alias Ribosomal protein S3Ae 0.21 Orthogroups_2024-Update
Bradi3g01210 No alias Ribosomal protein S3Ae 0.15 Orthogroups_2024-Update
Brara.A00356.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.A03750.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Brara.C03077.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Brara.E03419.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.28 Orthogroups_2024-Update
Brara.H01188.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Brara.K00335.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Cre13.g568650 No alias Ribosomal protein S3Ae 0.18 Orthogroups_2024-Update
GRMZM2G145258 No alias Ribosomal protein S3Ae 0.1 Orthogroups_2024-Update
Glyma.01G236600 No alias Ribosomal protein S3Ae 0.06 Orthogroups_2024-Update
Glyma.10G245200 No alias Ribosomal protein S3Ae 0.1 Orthogroups_2024-Update
Glyma.11G006600 No alias Ribosomal protein S3Ae 0.09 Orthogroups_2024-Update
Glyma.20G149400 No alias Ribosomal protein S3Ae 0.03 Orthogroups_2024-Update
HORVU1Hr1G032060.4 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
HORVU4Hr1G070370.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Kfl00143_0140 kfl00143_0140_v1.1 (p33444|rs3a_catro : 380.0) 40S ribosomal protein S3a... 0.03 Orthogroups_2024-Update
LOC_Os03g10340 No alias 40S ribosomal protein S3a, putative, expressed 0.03 Orthogroups_2024-Update
MA_31004g0010 No alias (at4g34670 : 389.0) Ribosomal protein S3Ae; FUNCTIONS... 0.06 Orthogroups_2024-Update
Mp6g02810.1 No alias component RPS3a of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00005371-RA No alias (at4g34670 : 408.0) Ribosomal protein S3Ae; FUNCTIONS... 0.05 Orthogroups_2024-Update
Potri.005G051200 No alias Ribosomal protein S3Ae 0.06 Orthogroups_2024-Update
Potri.008G156300 No alias Ribosomal protein S3Ae 0.06 Orthogroups_2024-Update
Potri.010G083200 No alias Ribosomal protein S3Ae 0.07 Orthogroups_2024-Update
Pp1s179_15V6 No alias 40s ribosomal protein s3a 0.15 Orthogroups_2024-Update
Pp1s17_306V6 No alias 40s ribosomal protein s3a 0.14 Orthogroups_2024-Update
Pp1s219_50V6 No alias 40s ribosomal protein s3a 0.19 Orthogroups_2024-Update
Pp1s92_47V6 No alias 40s ribosomal protein s3a 0.03 Orthogroups_2024-Update
Seita.2G378300.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Seita.9G502500.1 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.001G467300.3 No alias component *(eS1) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Solyc03g097900 No alias 40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC) 0.03 Orthogroups_2024-Update
Solyc06g072490 No alias 40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC) 0.23 Orthogroups_2024-Update
Solyc09g082520 No alias 40S ribosomal protein S3a (AHRD V3.3 *** K4CVM9_SOLLC) 0.09 Orthogroups_2024-Update
Sopen06g028860 No alias Ribosomal S3Ae family 0.28 Orthogroups_2024-Update
Sopen09g031380 No alias Ribosomal S3Ae family 0.05 Orthogroups_2024-Update
evm.model.contig_2340.2 No alias (p49397|rs3a_orysa : 304.0) 40S ribosomal protein S3a... 0.3 Orthogroups_2024-Update
evm.model.tig00020710.39 No alias (at4g34670 : 313.0) Ribosomal protein S3Ae; FUNCTIONS... 0.15 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 16 221
No external refs found!