1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G370300.1

Sobic.002G370300.1


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G370300.1

Target Alias Description ECC score Gene Family Method Actions
A4A49_00880 No alias pectinesterase qrt1 0.03 Orthogroups_2024-Update
A4A49_28049 No alias putative pectinesterase 8 0.02 Orthogroups_2024-Update
A4A49_32955 No alias putative pectinesterase 53 0.03 Orthogroups_2024-Update
Bradi2g44500 No alias pectinesterase 11 0.02 Orthogroups_2024-Update
Brara.B00879.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.F02821.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
GRMZM2G070913 No alias pectinesterase 11 0.03 Orthogroups_2024-Update
Glyma.01G066000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G066100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G068100 No alias Pectin lyase-like superfamily protein 0.01 Orthogroups_2024-Update
Glyma.02G294700 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os01g53990 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g39760 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
MA_10428610g0010 No alias (at5g19730 : 471.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_304854g0010 No alias (at2g21610 : 347.0) pectinesterase 11 (PE11); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00015801-RA No alias (at5g19730 : 236.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.012G115200 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s175_19V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s461_15V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s67_157V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.2G384400.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.2G414500.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.3G174200.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.3G333900.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Sobic.002G138400.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Sopen01g030950 No alias Pectinesterase 0.03 Orthogroups_2024-Update
Sopen08g027120 No alias Pectinesterase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 64 356
No external refs found!