1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G374100.1

Sobic.002G374100.1


Description : component *(JAZ) of jasmonic acid receptor complex & TIFY-type transcription factor


Gene families : OG_42_0000349 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G374100.1
Cluster HCAA Clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AC197764.4_FG003 No alias TIFY domain/Divergent CCT motif family protein 0.03 Orthogroups_2024-Update
Bradi3g23220 No alias jasmonate-zim-domain protein 1 0.06 Orthogroups_2024-Update
GRMZM2G145458 No alias jasmonate-zim-domain protein 11 0.04 Orthogroups_2024-Update
LOC_Os03g08320 No alias ZIM domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g25230 No alias ZIM domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g25250 No alias ZIM domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10426545g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_10426545g0020 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_10436587g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_68496g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00003986-RA No alias (at1g74950 : 83.6) TIFY10B; CONTAINS InterPro DOMAIN/s:... 0.04 Orthogroups_2024-Update
PSME_00014976-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00024545-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00046059-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Pp1s88_114V6 No alias MEB5.8; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.2G388400.1 No alias component *(JAZ) of jasmonic acid receptor complex &... 0.05 Orthogroups_2024-Update
Seita.9G252500.1 No alias component *(JAZ) of jasmonic acid receptor complex &... 0.03 Orthogroups_2024-Update
Seita.9G517900.1 No alias TIFY-type transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR010399 Tify_dom 94 126
IPR018467 CCT_CS 177 202
No external refs found!