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  5. Sobic.002G374900.1

Sobic.002G374900.1


Description : component *(uS2) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G374900.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
36118 No alias 40s ribosomal protein SA 0.2 Orthogroups_2024-Update
At1g72370 No alias 40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1] 0.03 Orthogroups_2024-Update
At3g04770 No alias 40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3] 0.03 Orthogroups_2024-Update
Bradi1g20880 No alias 40s ribosomal protein SA B 0.28 Orthogroups_2024-Update
Bradi1g23780 No alias 40s ribosomal protein SA B 0.29 Orthogroups_2024-Update
Bradi1g60310 No alias 40s ribosomal protein SA B 0.27 Orthogroups_2024-Update
Bradi1g72480 No alias 40s ribosomal protein SA B 0.28 Orthogroups_2024-Update
Brara.B02024.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.32 Orthogroups_2024-Update
Brara.D01465.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.4 Orthogroups_2024-Update
Brara.G02358.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.48 Orthogroups_2024-Update
Brara.G03124.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.43 Orthogroups_2024-Update
Cre10.g432800 No alias 40s ribosomal protein SA B 0.03 Orthogroups_2024-Update
GRMZM2G092719 No alias 40s ribosomal protein SA B 0.1 Orthogroups_2024-Update
GRMZM2G126821 No alias 40s ribosomal protein SA B 0.24 Orthogroups_2024-Update
GRMZM2G145308 No alias 40s ribosomal protein SA B 0.11 Orthogroups_2024-Update
GRMZM2G159237 No alias 40s ribosomal protein SA B 0.16 Orthogroups_2024-Update
Glyma.07G043800 No alias 40s ribosomal protein SA B 0.21 Orthogroups_2024-Update
Glyma.08G159800 No alias 40s ribosomal protein SA B 0.2 Orthogroups_2024-Update
Glyma.15G267100 No alias 40s ribosomal protein SA B 0.13 Orthogroups_2024-Update
Glyma.16G012200 No alias 40s ribosomal protein SA B 0.16 Orthogroups_2024-Update
HORVU2Hr1G030880.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
HORVU4Hr1G077240.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Kfl00055_0160 kfl00055_0160_v1.1 (o22518|rssa_soybn : 376.0) 40S ribosomal protein SA... 0.03 Orthogroups_2024-Update
LOC_Os03g08440 No alias ribosomal protein S2, putative, expressed 0.04 Orthogroups_2024-Update
Mp2g26290.1 No alias component RPSa of SSU proteome 0.05 Orthogroups_2024-Update
Potri.001G164000 No alias 40s ribosomal protein SA 0.06 Orthogroups_2024-Update
Potri.003G071200 No alias 40s ribosomal protein SA B 0.19 Orthogroups_2024-Update
Potri.012G117600 No alias 40s ribosomal protein SA B 0.12 Orthogroups_2024-Update
Potri.015G112900 No alias 40s ribosomal protein SA 0.05 Orthogroups_2024-Update
Pp1s173_16V6 No alias 40s ribosomal protein 0.09 Orthogroups_2024-Update
Pp1s48_103V6 No alias 40s ribosomal protein sa 0.23 Orthogroups_2024-Update
Pp1s59_133V6 No alias 40s ribosomal protein sa 0.02 Orthogroups_2024-Update
Seita.2G389700.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.44 Orthogroups_2024-Update
Seita.9G371600.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Seita.9G517100.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.35 Orthogroups_2024-Update
Solyc03g019780 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC) 0.23 Orthogroups_2024-Update
Solyc06g072120 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC) 0.34 Orthogroups_2024-Update
Sopen03g029850 No alias Ribosomal protein S2 0.39 Orthogroups_2024-Update
Sopen06g028410 No alias Ribosomal protein S2 0.29 Orthogroups_2024-Update
evm.model.contig_4456.25 No alias (o22518|rssa_soybn : 282.0) 40S ribosomal protein SA... 0.38 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 122 187
IPR001865 Ribosomal_S2 23 116
IPR032281 40S_SA_C 207 305
No external refs found!