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  5. Sobic.002G378100.1

Sobic.002G378100.1


Description : nuclear-encoded organellar RNA polymerase *(NEP)


Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G378100.1
Cluster HCAA Clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
At1g68990 No alias DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3] 0.03 Orthogroups_2024-Update
At2g24120 No alias DNA-directed RNA polymerase 3, chloroplastic... 0.04 Orthogroups_2024-Update
At5g15700 No alias DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75] 0.04 Orthogroups_2024-Update
Bradi1g31066 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g08880 No alias DNA/RNA polymerases superfamily protein 0.15 Orthogroups_2024-Update
Brara.B00618.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.07 Orthogroups_2024-Update
Brara.D01444.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.05 Orthogroups_2024-Update
Brara.I04503.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.05 Orthogroups_2024-Update
GRMZM2G115564 No alias DNA/RNA polymerases superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G381395 No alias DNA/RNA polymerases superfamily protein 0.09 Orthogroups_2024-Update
Glyma.08G253800 No alias DNA/RNA polymerases superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G091400 No alias male gametophyte defective 3 0.03 Orthogroups_2024-Update
Glyma.17G071600 No alias DNA/RNA polymerases superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G276200 No alias DNA/RNA polymerases superfamily protein 0.08 Orthogroups_2024-Update
HORVU5Hr1G051530.5 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.03 Orthogroups_2024-Update
Mp3g02090.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.02 Orthogroups_2024-Update
Potri.004G111600 No alias DNA/RNA polymerases superfamily protein 0.08 Orthogroups_2024-Update
Potri.006G181100 No alias DNA/RNA polymerases superfamily protein 0.06 Orthogroups_2024-Update
Potri.008G112800 No alias male gametophyte defective 3 0.05 Orthogroups_2024-Update
Pp1s246_118V6 No alias rna polymerase 0.05 Orthogroups_2024-Update
Pp1s256_41V6 No alias rna polymerase 0.03 Orthogroups_2024-Update
Solyc02g089340 No alias DNA-directed RNA polymerase (AHRD V3.3 *** K4BC86_SOLLC) 0.03 Orthogroups_2024-Update
Solyc05g010660 No alias DNA-directed RNA polymerase (AHRD V3.3 *** K4BXN8_SOLLC) 0.05 Orthogroups_2024-Update
Sopen05g006460 No alias DNA-dependent RNA polymerase 0.1 Orthogroups_2024-Update
evm.model.contig_511.3 No alias (at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
evm.model.tig00021493.48 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
evm.model.tig00021493.49 No alias (q8l6j3|rpo2b_tobac : 377.0) DNA-directed RNA polymerase... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR029262 RPOL_N 141 462
No external refs found!