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  5. Sobic.002G387500.1

Sobic.002G387500.1


Description : SSU processome assembly factor *(SWA3)


Gene families : OG_42_0001960 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G387500.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
At5g60990 No alias DEAD-box ATP-dependent RNA helicase 10... 0.03 Orthogroups_2024-Update
Bradi1g18930 No alias DEA(D/H)-box RNA helicase family protein 0.06 Orthogroups_2024-Update
Bradi1g20340 No alias RNA helicase 36 0.03 Orthogroups_2024-Update
Brara.C04220.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I04886.1 No alias SSU processome assembly factor *(SWA3) 0.03 Orthogroups_2024-Update
Cre12.g505200 No alias DEA(D/H)-box RNA helicase family protein 0.07 Orthogroups_2024-Update
Cre16.g683500 No alias RNA helicase 36 0.02 Orthogroups_2024-Update
GRMZM2G075027 No alias DEA(D/H)-box RNA helicase family protein 0.04 Orthogroups_2024-Update
Glyma.15G261600 No alias RNA helicase 36 0.03 Orthogroups_2024-Update
Kfl00662_0060 kfl00662_0060_v1.1 (at1g16280 : 431.0) RNA helicase 36 (RH36); FUNCTIONS... 0.03 Orthogroups_2024-Update
LOC_Os03g46610 No alias DEAD-box ATP-dependent RNA helicase, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s28_25V6 No alias dead (asp-glu-ala-asp) box polypeptide 47 0.03 Orthogroups_2024-Update
evm.model.tig00020848.20 No alias (at5g60990 : 445.0) DEA(D/H)-box RNA helicase family... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009092 homoserine metabolic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0019346 transsulfuration IEP Predicted GO
BP GO:0019362 pyridine nucleotide metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Predicted GO
BP GO:0050667 homocysteine metabolic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0072524 pyridine-containing compound metabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 100 267
IPR001650 Helicase_C 308 417
No external refs found!