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  5. Sobic.002G389500.1

Sobic.002G389500.1


Description : pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex


Gene families : OG_42_0004273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004273_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G389500.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
81986 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
A4A49_39430 No alias haca ribonucleoprotein complex subunit 4 0.07 Orthogroups_2024-Update
At3g57150 No alias Uncharacterized protein At3g57150 (Fragment)... 0.05 Orthogroups_2024-Update
Bradi2g04950 No alias homologue of NAP57 0.08 Orthogroups_2024-Update
Bradi4g38770 No alias homologue of NAP57 0.04 Orthogroups_2024-Update
Brara.G01728.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.05 Orthogroups_2024-Update
Cre03.g172950 No alias homologue of NAP57 0.01 Orthogroups_2024-Update
GRMZM2G044128 No alias homologue of NAP57 0.04 Orthogroups_2024-Update
GRMZM2G172956 No alias homologue of NAP57 0.07 Orthogroups_2024-Update
Glyma.15G056100 No alias homologue of NAP57 0.06 Orthogroups_2024-Update
HORVU2Hr1G027370.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.08 Orthogroups_2024-Update
HORVU2Hr1G027400.5 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.05 Orthogroups_2024-Update
Kfl00043_0130 kfl00043_0130_v1.1 (at3g57150 : 649.0) Encodes a putative pseudouridine... 0.02 Orthogroups_2024-Update
Potri.016G041200 No alias homologue of NAP57 0.05 Orthogroups_2024-Update
Seita.2G404800.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.11 Orthogroups_2024-Update
Seita.5G057000.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.18 Orthogroups_2024-Update
Solyc02g081810 No alias H/ACA ribonucleoprotein complex subunit 4 (AHRD V3.3 ***... 0.11 Orthogroups_2024-Update
Sopen02g026410 No alias DKCLD (NUC011) domain 0.07 Orthogroups_2024-Update
evm.model.tig00000553.10 No alias (at3g57150 : 635.0) Encodes a putative pseudouridine... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR012960 Dyskerin-like 60 117
IPR002501 PsdUridine_synth_N 121 237
IPR002478 PUA 308 380
IPR032819 TruB_C 238 304
No external refs found!