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  5. Sobic.002G400050.1

Sobic.002G400050.1


Description : Unknown function


Gene families : OG_42_0000978 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G400050.1
Cluster HCAA Clusters: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
Bradi1g02487 No alias Function unknown 0.04 Orthogroups_2024-Update
Bradi3g06101 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G030170.6 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g55050 No alias OsFBX64 - F-box domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g57940 No alias OsFBX74 - F-box domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g40960 No alias OsFBX147 - F-box domain containing protein, expressed 0.02 Orthogroups_2024-Update
Sobic.007G011500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009606 tropism IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0010274 hydrotropism IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!