At3g49010

Description : 60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:A0A178VD16]

Gene families : OG_42_0002061 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002061_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At3g49010
Cluster	HCCA clusters: Cluster_186

Target	Alias	Description	ECC score	Gene Family Method
165483	No alias	breast basic conserved 1	0.03	Orthogroups_2024-Update
Bradi3g01600	No alias	breast basic conserved 1	0.06	Orthogroups_2024-Update
Bradi3g16170	No alias	breast basic conserved 1	0.05	Orthogroups_2024-Update
Brara.A02197.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.F01634.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.F02079.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.I00594.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Cre14.g630100	No alias	breast basic conserved 1	0.08	Orthogroups_2024-Update
HORVU6Hr1G009400.2	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
HORVU7Hr1G067060.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Kfl00461_0040	kfl00461_0040_v1.1	(p41129\|rl132_brana : 229.0) 60S ribosomal protein L13-2...	0.03	Orthogroups_2024-Update
MA_10430790g0030	No alias	(at3g49010 : 263.0) Encodes 60S ribosomal protein L13....	0.04	Orthogroups_2024-Update
Mp2g19790.1	No alias	component RPL13 of LSU proteome component	0.03	Orthogroups_2024-Update
PSME_00003763-RA	No alias	(at3g49010 : 179.0) Encodes 60S ribosomal protein L13....	0.06	Orthogroups_2024-Update
Potri.003G102800	No alias	breast basic conserved 1	0.03	Orthogroups_2024-Update
Potri.013G027600	No alias	breast basic conserved 1	0.05	Orthogroups_2024-Update
Pp1s21_106V6	No alias	60s ribosomal protein l13-2	0.05	Orthogroups_2024-Update
Pp1s459_9V6	No alias	60s ribosomal protein l13-2	0.07	Orthogroups_2024-Update
Pp1s58_38V6	No alias	60s ribosomal protein l13-2	0.03	Orthogroups_2024-Update
Seita.5G275700.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Seita.5G276200.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.003G408100.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.009G065400.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Solyc08g075700	No alias	60S ribosomal protein L13 (AHRD V3.3 *** K4CMT7_SOLLC)	0.07	Orthogroups_2024-Update
Solyc12g096150	No alias	60S ribosomal protein L13 (AHRD V3.3 *** K4DH88_SOLLC)	0.05	Orthogroups_2024-Update
Sopen08g024350	No alias	Ribosomal protein L13e	0.07	Orthogroups_2024-Update
evm.model.contig_2033.18	No alias	(at3g49010 : 217.0) Encodes 60S ribosomal protein L13....	0.07	Orthogroups_2024-Update
evm.model.tig00020629.36	No alias	(p41128\|rl131_brana : 211.0) 60S ribosomal protein L13-1...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predicted GO
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	Predicted GO
MF	GO:0004664	prephenate dehydratase activity	IEP	Predicted GO
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predicted GO
BP	GO:0006098	pentose-phosphate shunt	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006739	NADP metabolic process	IEP	Predicted GO
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0006783	heme biosynthetic process	IEP	Predicted GO
BP	GO:0006784	heme a biosynthetic process	IEP	Predicted GO
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Predicted GO
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predicted GO
BP	GO:0042168	heme metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0042440	pigment metabolic process	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0046148	pigment biosynthetic process	IEP	Predicted GO
BP	GO:0046160	heme a metabolic process	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	Predicted GO
BP	GO:0051186	cofactor metabolic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Predicted GO
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	6	184

External Links

No external refs found!

At3g49010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation