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  5. Sobic.002G403500.3

Sobic.002G403500.3


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G403500.3
Cluster HCAA Clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
101093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
113567 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
73641 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
AC204292.4_FG002 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
At1g25360 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Orthogroups_2024-Update
Bradi1g27320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g11440 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g57140 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g29450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.A00314.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.A02436.1 No alias RNA editing factor *(CRR2) 0.04 Orthogroups_2024-Update
Brara.A03196.1 No alias RNA editing factor *(CREF3) 0.03 Orthogroups_2024-Update
Brara.E03381.1 No alias RNA editing factor *(MEF19) 0.03 Orthogroups_2024-Update
Brara.F01301.1 No alias RNA editing factor *(OTP970) 0.02 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G076257 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G168170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G159100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G078900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G068600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G088000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G008800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G119700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.14G028500 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G259800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G083680.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g10800 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g34700 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os02g44480 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g64370 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g53630 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g36350 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g49920 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g02200 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g45410 No alias expressed protein 0.03 Orthogroups_2024-Update
MA_470679g0010 No alias (at3g24000 : 433.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_7907g0020 No alias (at3g57430 : 717.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00001413-RA No alias (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00005130-RA No alias (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... 0.04 Orthogroups_2024-Update
PSME_00013106-RA No alias (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00013280-RA No alias (at4g33170 : 410.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00014659-RA No alias (at1g11290 : 712.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00024026-RA No alias (at4g20770 : 565.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00036148-RA No alias (at2g22070 : 583.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00047047-RA No alias (at1g11290 : 654.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00048581-RA No alias (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00048766-RA No alias (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00052756-RA No alias (at3g09040 : 614.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Pp1s208_104V6 No alias K23L20.13; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.1G215700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G016300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G161100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G272600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G097700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g096610 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc04g016540 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc08g076150 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g027460 No alias PPR repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 281 329
IPR002885 Pentatricopeptide_repeat 357 380
IPR002885 Pentatricopeptide_repeat 458 483
IPR002885 Pentatricopeptide_repeat 386 412
IPR002885 Pentatricopeptide_repeat 182 211
IPR002885 Pentatricopeptide_repeat 257 278
No external refs found!