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  5. Sobic.002G416300.1

Sobic.002G416300.1


Description : Unknown function


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G416300.1
Cluster HCAA Clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
172324 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
438800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g32700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.I02588.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G041549 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G340444 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G082830.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G087960.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G121280.7 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os01g60730 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00022170-RA No alias (at1g53820 : 134.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00054098-RA No alias (at3g16720 : 124.0) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
Potri.007G064400 No alias RING-H2 finger A3A 0.02 Orthogroups_2024-Update
Potri.011G063100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s71_157V6 No alias ac009177_16 ring-h2 zinc finger protein atl6 0.04 Orthogroups_2024-Update
Sobic.008G175200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G110500.2 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 102 145
No external refs found!