- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : F-box/RNI-like superfamily protein [Source:TAIR;Acc:AT3G49150]
Gene families : OG_42_0000608 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000608_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Arabidopsis release: At3g49150 | |
| Cluster | HCCA clusters: Cluster_199 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At3g58890 | No alias | RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LXR3] | 0.03 | Orthogroups_2024-Update | |
| Brara.C04106.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.G01823.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.H00020.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.I04066.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.2G344300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003909 | DNA ligase activity | IEP | Predicted GO |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Predicted GO |
| MF | GO:0004175 | endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Predicted GO |
| MF | GO:0005199 | structural constituent of cell wall | IEP | Predicted GO |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
| MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
| BP | GO:0009664 | plant-type cell wall organization | IEP | Predicted GO |
| BP | GO:0009690 | cytokinin metabolic process | IEP | Predicted GO |
| BP | GO:0010817 | regulation of hormone levels | IEP | Predicted GO |
| MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Predicted GO |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Predicted GO |
| MF | GO:0019139 | cytokinin dehydrogenase activity | IEP | Predicted GO |
| BP | GO:0019321 | pentose metabolic process | IEP | Predicted GO |
| BP | GO:0019566 | arabinose metabolic process | IEP | Predicted GO |
| CC | GO:0031012 | extracellular matrix | IEP | Predicted GO |
| BP | GO:0034754 | cellular hormone metabolic process | IEP | Predicted GO |
| BP | GO:0042445 | hormone metabolic process | IEP | Predicted GO |
| CC | GO:0044421 | extracellular region part | IEP | Predicted GO |
| BP | GO:0045229 | external encapsulating structure organization | IEP | Predicted GO |
| BP | GO:0046373 | L-arabinose metabolic process | IEP | Predicted GO |
| MF | GO:0046556 | alpha-L-arabinofuranosidase activity | IEP | Predicted GO |
| MF | GO:0050664 | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | IEP | Predicted GO |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | Predicted GO |
| BP | GO:0071555 | cell wall organization | IEP | Predicted GO |
| BP | GO:0071669 | plant-type cell wall organization or biogenesis | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001810 | F-box_dom | 17 | 51 |
| No external refs found! |