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  5. At3g49170

At3g49170


Description : Pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5G1T1]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g49170
Cluster HCCA clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
82255 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_32855 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.03 Orthogroups_2024-Update
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At2g27610 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Orthogroups_2024-Update
At2g34400 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Orthogroups_2024-Update
At2g39620 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.04 Orthogroups_2024-Update
At3g63370 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.05 Orthogroups_2024-Update
Bradi1g72290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g40131 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I02594.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G264700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G001100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G063370.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g60250 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g11700 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os03g13830 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g58100 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g41120 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g24150 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
MA_10157572g0010 No alias (at4g18750 : 548.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_103698g0030 No alias (at3g13770 : 453.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_123466g0010 No alias (at3g57430 : 553.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_20168g0010 No alias (at3g26782 : 533.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_230261g0010 No alias (at4g13650 : 756.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_68084g0010 No alias (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_68707g0010 No alias (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_7977g0010 No alias (at4g18750 : 283.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00001463-RA No alias (at4g33170 : 587.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00006107-RA No alias (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00008509-RA No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00018595-RA No alias (at1g11290 : 678.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00034005-RA No alias (at3g23330 : 585.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.001G108500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G466066 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G001200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.011G156800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.013G058900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.1G290500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G242100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G277100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen04g022860 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 713 840
IPR002885 Pentatricopeptide_repeat 437 485
IPR002885 Pentatricopeptide_repeat 539 586
IPR002885 Pentatricopeptide_repeat 233 280
IPR002885 Pentatricopeptide_repeat 335 383
IPR002885 Pentatricopeptide_repeat 130 177
IPR002885 Pentatricopeptide_repeat 684 707
IPR002885 Pentatricopeptide_repeat 98 127
IPR002885 Pentatricopeptide_repeat 614 637
No external refs found!