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  5. Sobic.003G001300.1

Sobic.003G001300.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G001300.1
Cluster HCAA Clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
117908 No alias C2H2 and C2HC zinc fingers superfamily protein 0.04 Orthogroups_2024-Update
A4A49_27071 No alias protein indeterminate-domain 9 0.02 Orthogroups_2024-Update
Brara.H02093.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Glyma.08G092300 No alias indeterminate(ID)-domain 14 0.03 Orthogroups_2024-Update
Glyma.19G180400 No alias indeterminate(ID)-domain 4 0.03 Orthogroups_2024-Update
Glyma.20G184000 No alias indeterminate(ID)-domain 4 0.03 Orthogroups_2024-Update
LOC_Os01g09850 No alias ZOS1-04 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
Potri.015G033100 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 72 94
No external refs found!