Sobic.003G012700.1

Description : component *(uS8) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001161 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001161_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.003G012700.1
Cluster	HCAA Clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
228163	No alias	Ribosomal protein S8 family protein	0.11	Orthogroups_2024-Update
At5g59850	No alias	AT1G07770 protein [Source:UniProtKB/TrEMBL;Acc:B9DI04]	0.07	Orthogroups_2024-Update
Bradi2g23110	No alias	ribosomal protein S15A	0.17	Orthogroups_2024-Update
Bradi2g54450	No alias	ribosomal protein S15A	0.18	Orthogroups_2024-Update
Brara.B01062.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Brara.C01067.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Brara.F00468.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Brara.J01354.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Cre05.g234637	No alias	Ribosomal protein S8 family protein	0.13	Orthogroups_2024-Update
GRMZM2G083497	No alias	ribosomal protein S15A	0.12	Orthogroups_2024-Update
Glyma.01G240000	No alias	ribosomal protein S15A	0.08	Orthogroups_2024-Update
Glyma.07G255500	No alias	ribosomal protein S15A	0.07	Orthogroups_2024-Update
Glyma.11G003600	No alias	ribosomal protein S15A	0.07	Orthogroups_2024-Update
Glyma.11G003700	No alias	ribosomal protein S15A	0.07	Orthogroups_2024-Update
Glyma.15G102550	No alias	ribosomal protein S15A	0.12	Orthogroups_2024-Update
Glyma.17G018600	No alias	ribosomal protein S15A	0.14	Orthogroups_2024-Update
HORVU1Hr1G072060.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
HORVU3Hr1G086930.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Kfl00864_0040	kfl00864_0040_v1.1	(at5g59850 : 230.0) Ribosomal protein S8 family protein;...	0.07	Orthogroups_2024-Update
LOC_Os02g27760	No alias	40S ribosomal protein S15a, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os07g10720	No alias	40S ribosomal protein S15a, putative, expressed	0.05	Orthogroups_2024-Update
MA_10427318g0020	No alias	(at3g46040 : 214.0) Regulated by TCP20.; ribosomal...	0.09	Orthogroups_2024-Update
MA_57835g0010	No alias	(at3g46040 : 223.0) Regulated by TCP20.; ribosomal...	0.1	Orthogroups_2024-Update
MA_82191g0010	No alias	(at3g46040 : 223.0) Regulated by TCP20.; ribosomal...	0.03	Orthogroups_2024-Update
Mp8g06510.1	No alias	component RPS15a of SSU proteome	0.06	Orthogroups_2024-Update
Mp8g13010.1	No alias	component RPS15a of SSU proteome	0.06	Orthogroups_2024-Update
PSME_00001830-RA	No alias	(at5g59850 : 244.0) Ribosomal protein S8 family protein;...	0.04	Orthogroups_2024-Update
PSME_00015526-RA	No alias	(at5g59850 : 244.0) Ribosomal protein S8 family protein;...	0.11	Orthogroups_2024-Update
Potri.001G118100	No alias	ribosomal protein S15A	0.09	Orthogroups_2024-Update
Potri.010G208700	No alias	Ribosomal protein S8 family protein	0.04	Orthogroups_2024-Update
Pp1s115_101V6	No alias	40s ribosomal protein s15a	0.11	Orthogroups_2024-Update
Pp1s1_304V6	No alias	40s ribosomal protein s15a	0.07	Orthogroups_2024-Update
Pp1s426_18V6	No alias	40s ribosomal protein s15a	0.11	Orthogroups_2024-Update
Pp1s45_88V6	No alias	40s ribosomal protein s15a	0.11	Orthogroups_2024-Update
Pp1s61_209V6	No alias	40s ribosomal protein s15a	0.03	Orthogroups_2024-Update
Seita.2G319400.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.16	Orthogroups_2024-Update
Seita.5G374600.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Seita.8G174900.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Sopen04g025860	No alias	Ribosomal protein S8	0.16	Orthogroups_2024-Update
Sopen04g026010	No alias	Ribosomal protein S8	0.06	Orthogroups_2024-Update
Sopen04g026020	No alias	Ribosomal protein S8	0.19	Orthogroups_2024-Update
evm.model.contig_2045.5	No alias	(at5g59850 : 190.0) Ribosomal protein S8 family protein;...	0.16	Orthogroups_2024-Update
evm.model.tig00000158.110	No alias	(q9at34\|rs15a_dauca : 210.0) 40S ribosomal protein S15a...	0.12	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004668	protein-arginine deiminase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004827	proline-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Predicted GO
BP	GO:0006595	polyamine metabolic process	IEP	Predicted GO
BP	GO:0006596	polyamine biosynthetic process	IEP	Predicted GO
BP	GO:0006839	mitochondrial transport	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
BP	GO:0009309	amine biosynthetic process	IEP	Predicted GO
BP	GO:0009445	putrescine metabolic process	IEP	Predicted GO
BP	GO:0009446	putrescine biosynthetic process	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0044106	cellular amine metabolic process	IEP	Predicted GO
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predicted GO
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predicted GO
BP	GO:0070585	protein localization to mitochondrion	IEP	Predicted GO
BP	GO:0071806	protein transmembrane transport	IEP	Predicted GO
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
BP	GO:0097164	ammonium ion metabolic process	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000630	Ribosomal_S8	7	130

External Links

No external refs found!

Sobic.003G012700.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation