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  5. Sobic.003G016500.1

Sobic.003G016500.1


Description : class-III histone methyltransferase *(Trx) & N-methyltransferase component *(ATX3/4/5) of COMPASS histone trimethylation complex


Gene families : OG_42_0002244 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002244_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G016500.1
Cluster HCAA Clusters: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
164635 No alias SET domain protein 14 0.02 Orthogroups_2024-Update
Brara.J00843.1 No alias class-III histone methyltransferase *(Trx) &... 0.02 Orthogroups_2024-Update
Glyma.06G127800 No alias SET domain protein 16 0.03 Orthogroups_2024-Update
Glyma.07G056000 No alias SET domain protein 14 0.03 Orthogroups_2024-Update
HORVU3Hr1G059080.11 No alias class-III histone methyltransferase *(Trx) &... 0.03 Orthogroups_2024-Update
Pp1s223_92V6 No alias set domain protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
CC GO:0000782 telomere cap complex IEP Predicted GO
CC GO:0000783 nuclear telomere cap complex IEP Predicted GO
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006361 transcription initiation from RNA polymerase I promoter IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:0140223 general transcription initiation factor activity IEP Predicted GO
CC GO:1990879 CST complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000313 PWWP_dom 172 265
IPR001214 SET_dom 839 944
No external refs found!