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  5. Sobic.003G026700.1

Sobic.003G026700.1


Description : BBX class-IV transcription factor


Gene families : OG_42_0002427 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G026700.1
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
444777 No alias light-regulated zinc finger protein 1 0.02 Orthogroups_2024-Update
At1g78600 No alias Light-regulated zinc finger protein 1... 0.04 Orthogroups_2024-Update
Bradi4g40250 No alias light-regulated zinc finger protein 1 0.01 Orthogroups_2024-Update
Brara.G03597.1 No alias BBX class-IV transcription factor 0.04 Orthogroups_2024-Update
Glyma.09G099000 No alias light-regulated zinc finger protein 1 0.06 Orthogroups_2024-Update
Glyma.12G233900 No alias light-regulated zinc finger protein 1 0.04 Orthogroups_2024-Update
Glyma.13G265000 No alias light-regulated zinc finger protein 1 0.02 Orthogroups_2024-Update
HORVU3Hr1G026500.6 No alias BBX class-IV transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G028150.2 No alias BBX class-IV transcription factor 0.04 Orthogroups_2024-Update
LOC_Os01g10580 No alias B-box zinc finger family protein, putative, expressed 0.04 Orthogroups_2024-Update
Potri.001G384000 No alias light-regulated zinc finger protein 1 0.04 Orthogroups_2024-Update
Potri.011G105400 No alias light-regulated zinc finger protein 1 0.02 Orthogroups_2024-Update
Seita.4G072000.1 No alias BBX class-IV transcription factor 0.05 Orthogroups_2024-Update
Seita.5G143400.1 No alias BBX class-IV transcription factor 0.06 Orthogroups_2024-Update
Sopen07g030440 No alias B-box zinc finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR000315 Znf_B-box 56 95
No external refs found!