Sobic.003G029600.1

Description : subunit alpha of coat protein complex

Gene families : OG_42_0002646 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002646_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.003G029600.1
Cluster	HCAA Clusters: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g78470	No alias	Coatomer, alpha subunit	0.07	Orthogroups_2024-Update
Bradi2g55640	No alias	Coatomer, alpha subunit	0.07	Orthogroups_2024-Update
Brara.H01794.1	No alias	subunit alpha of coat protein complex	0.03	Orthogroups_2024-Update
Cre13.g565850	No alias	Coatomer, alpha subunit	0.07	Orthogroups_2024-Update
Glyma.10G199300	No alias	Coatomer, alpha subunit	0.03	Orthogroups_2024-Update
Glyma.11G113000	No alias	Coatomer, alpha subunit	0.05	Orthogroups_2024-Update
Glyma.12G038900	No alias	Coatomer, alpha subunit	0.03	Orthogroups_2024-Update
Glyma.20G190900	No alias	Coatomer, alpha subunit	0.03	Orthogroups_2024-Update
HORVU4Hr1G007520.2	No alias	subunit alpha of coat protein complex	0.03	Orthogroups_2024-Update
HORVU4Hr1G088390.1	No alias	subunit alpha of coat protein complex	0.03	Orthogroups_2024-Update
Kfl00045_0430	kfl00045_0430_v1.1	(at1g62020 : 1226.0) Coatomer, alpha subunit; FUNCTIONS...	0.02	Orthogroups_2024-Update
Mp3g00050.1	No alias	subunit alpha of coat protein complex	0.03	Orthogroups_2024-Update
PSME_00024193-RA	No alias	(at1g62020 : 1949.0) Coatomer, alpha subunit; FUNCTIONS...	0.04	Orthogroups_2024-Update
Potri.012G074800	No alias	Coatomer, alpha subunit	0.02	Orthogroups_2024-Update
Potri.015G069700	No alias	Coatomer, alpha subunit	0.02	Orthogroups_2024-Update
Pp1s11_79V6	No alias	coatomer alpha	0.02	Orthogroups_2024-Update
Pp1s135_34V6	No alias	coatomer alpha	0.07	Orthogroups_2024-Update
Pp1s86_189V6	No alias	coatomer alpha	0.05	Orthogroups_2024-Update
Seita.5G140600.1	No alias	subunit alpha of coat protein complex	0.11	Orthogroups_2024-Update
Seita.9G119500.1	No alias	subunit alpha of coat protein complex	0.07	Orthogroups_2024-Update
Solyc04g080980	No alias	Coatomer subunit alpha (AHRD V3.3 *** K4BVH7_SOLLC)	0.02	Orthogroups_2024-Update
Solyc07g032100	No alias	Coatomer subunit alpha (AHRD V3.3 *** K4CDF4_SOLLC)	0.04	Orthogroups_2024-Update
Sopen07g015440	No alias	Coatomer (COPI) alpha subunit C-terminus	0.03	Orthogroups_2024-Update
evm.model.contig_3512.2	No alias	(at1g62020 : 1115.0) Coatomer, alpha subunit; FUNCTIONS...	0.02	Orthogroups_2024-Update
evm.model.tig00000144.152	No alias	(at1g62020 : 592.0) Coatomer, alpha subunit; FUNCTIONS...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	16Dec
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	16Dec
CC	GO:0030117	membrane coat	IEA	16Dec
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	IEA	16Dec
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Predicted GO
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	Predicted GO
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
CC	GO:0005740	mitochondrial envelope	IEP	Predicted GO
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	Predicted GO
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
BP	GO:0006873	cellular ion homeostasis	IEP	Predicted GO
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Predicted GO
BP	GO:0006875	cellular metal ion homeostasis	IEP	Predicted GO
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Predicted GO
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Predicted GO
BP	GO:0007034	vacuolar transport	IEP	Predicted GO
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Predicted GO
BP	GO:0009060	aerobic respiration	IEP	Predicted GO
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015672	monovalent inorganic cation transport	IEP	Predicted GO
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0016854	racemase and epimerase activity	IEP	Predicted GO
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Predicted GO
MF	GO:0016887	ATPase activity	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
BP	GO:0019646	aerobic electron transport chain	IEP	Predicted GO
BP	GO:0019725	cellular homeostasis	IEP	Predicted GO
BP	GO:0022904	respiratory electron transport chain	IEP	Predicted GO
BP	GO:0030003	cellular cation homeostasis	IEP	Predicted GO
CC	GO:0030118	clathrin coat	IEP	Predicted GO
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Predicted GO
CC	GO:0030125	clathrin vesicle coat	IEP	Predicted GO
CC	GO:0030127	COPII vesicle coat	IEP	Predicted GO
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Predicted GO
CC	GO:0030131	clathrin adaptor complex	IEP	Predicted GO
CC	GO:0030132	clathrin coat of coated pit	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
CC	GO:0031967	organelle envelope	IEP	Predicted GO
CC	GO:0031975	envelope	IEP	Predicted GO
BP	GO:0032469	endoplasmic reticulum calcium ion homeostasis	IEP	Predicted GO
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Predicted GO
BP	GO:0034220	ion transmembrane transport	IEP	Predicted GO
BP	GO:0042592	homeostatic process	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
CC	GO:0045277	respiratory chain complex IV	IEP	Predicted GO
BP	GO:0045333	cellular respiration	IEP	Predicted GO
BP	GO:0048193	Golgi vesicle transport	IEP	Predicted GO
BP	GO:0048878	chemical homeostasis	IEP	Predicted GO
BP	GO:0050801	ion homeostasis	IEP	Predicted GO
BP	GO:0055065	metal ion homeostasis	IEP	Predicted GO
BP	GO:0055074	calcium ion homeostasis	IEP	Predicted GO
BP	GO:0055080	cation homeostasis	IEP	Predicted GO
BP	GO:0055082	cellular chemical homeostasis	IEP	Predicted GO
CC	GO:0070069	cytochrome complex	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO
MF	GO:0070403	NAD+ binding	IEP	Predicted GO
BP	GO:0072503	cellular divalent inorganic cation homeostasis	IEP	Predicted GO
BP	GO:0072507	divalent inorganic cation homeostasis	IEP	Predicted GO
BP	GO:0098655	cation transmembrane transport	IEP	Predicted GO
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predicted GO
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predicted GO
BP	GO:0098771	inorganic ion homeostasis	IEP	Predicted GO
CC	GO:0098803	respiratory chain complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	198	231
IPR001680	WD40_repeat	241	276
IPR001680	WD40_repeat	84	121
IPR001680	WD40_repeat	43	79
IPR001680	WD40_repeat	126	163
IPR010714	Coatomer_asu_C	815	1217
IPR006692	Coatomer_WD-assoc_reg	348	768

External Links

No external refs found!

Sobic.003G029600.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation