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  5. Sobic.003G052000.1

Sobic.003G052000.1


Description : regulatory protein *(LOTR) involved in Casparian strip formation


Gene families : OG_42_0000240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G052000.1
Cluster HCAA Clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
103145 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
92536 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
Bradi1g23920 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Brara.C02251.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G129947 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Glyma.08G283600 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
LOC_Os11g10920 No alias carboxyl-terminal proteinase, putative, expressed 0.02 Orthogroups_2024-Update
Mp1g20310.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR025521 Neprosin_propep 145 260
IPR004314 Neprosin 285 495
No external refs found!