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Description : RING-H2-class CTL-subclass E3 ubiquitin ligase
Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor: Sobic.003G061900.2 | |
| Cluster | HCAA Clusters: Cluster_50 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GRMZM2G165044 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.04G075400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Solyc10g050170 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT2G15530.7) | 0.02 | Orthogroups_2024-Update | |
| Sopen03g037790 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update | |
| Sopen05g004600 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | Predicted GO |
| MF | GO:0004476 | mannose-6-phosphate isomerase activity | IEP | Predicted GO |
| MF | GO:0004650 | polygalacturonase activity | IEP | Predicted GO |
| CC | GO:0005618 | cell wall | IEP | Predicted GO |
| BP | GO:0006413 | translational initiation | IEP | Predicted GO |
| BP | GO:0006810 | transport | IEP | Predicted GO |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | Predicted GO |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Predicted GO |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Predicted GO |
| MF | GO:0016762 | xyloglucan:xyloglucosyl transferase activity | IEP | Predicted GO |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
| CC | GO:0030312 | external encapsulating structure | IEP | Predicted GO |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0035673 | oligopeptide transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0042887 | amide transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0046983 | protein dimerization activity | IEP | Predicted GO |
| CC | GO:0048046 | apoplast | IEP | Predicted GO |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Predicted GO |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | Predicted GO |
| BP | GO:0051179 | localization | IEP | Predicted GO |
| BP | GO:0051234 | establishment of localization | IEP | Predicted GO |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
| MF | GO:1904680 | peptide transmembrane transporter activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 469 | 511 |
| No external refs found! |