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  5. Sobic.003G062000.1

Sobic.003G062000.1


Description : Fasciclin-type arabinogalactan protein


Gene families : OG_42_0000509 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000509_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G062000.1
Cluster HCAA Clusters: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
Bradi2g00220 No alias FASCICLIN-like arabinogalactan-protein 11 0.05 Orthogroups_2024-Update
Bradi2g16560 No alias FASCICLIN-like arabinogalactan protein 13 precursor 0.06 Orthogroups_2024-Update
Bradi2g16570 No alias FASCICLIN-like arabinogalactan-protein 11 0.04 Orthogroups_2024-Update
Bradi2g34650 No alias FASCICLIN-like arabinogalactan-protein 11 0.06 Orthogroups_2024-Update
Bradi2g46120 No alias FASCICLIN-like arabinogalactan-protein 11 0.06 Orthogroups_2024-Update
Brara.B00081.1 No alias Fasciclin-type arabinogalactan protein 0.03 Orthogroups_2024-Update
Brara.C00098.1 No alias Fasciclin-type arabinogalactan protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G087570.1 No alias Unknown function 0.09 Orthogroups_2024-Update
HORVU3Hr1G018810.2 No alias Fasciclin-type arabinogalactan protein 0.06 Orthogroups_2024-Update
LOC_Os02g20540 No alias fasciclin domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g20560 No alias fasciclin domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.006G129200 No alias FASCICLIN-like arabinogalactan-protein 11 0.03 Orthogroups_2024-Update
Potri.015G129400 No alias FASCICLIN-like arabinogalactan-protein 11 0.03 Orthogroups_2024-Update
Potri.016G088700 No alias FASCICLIN-like arabinogalactan-protein 11 0.04 Orthogroups_2024-Update
Seita.3G146700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc11g069250 No alias Fasciclin-like arabinogalactan protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000782 FAS1_domain 61 195
No external refs found!