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  5. Sobic.003G073700.2

Sobic.003G073700.2


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G073700.2
Cluster HCAA Clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
A4A49_20769 No alias agamous-like mads-box protein agl15 0.03 Orthogroups_2024-Update
At3g30260 No alias AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6] 0.03 Orthogroups_2024-Update
Brara.D02091.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.E00520.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G344991 No alias AGAMOUS-like 16 0.03 Orthogroups_2024-Update
HORVU2Hr1G080490.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update
Potri.012G062300 No alias AGAMOUS-like 8 0.02 Orthogroups_2024-Update
Pp1s8_101V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Solyc08g067230 No alias MADS box transcription factor (AHRD V3.3 *** G3EIU8_9SOLA) 0.04 Orthogroups_2024-Update
Sopen01g037770 No alias K-box region 0.02 Orthogroups_2024-Update
evm.model.tig00000944.9 No alias (at5g13790 : 92.4) AGL15 (AGAMOUS-Like 15) is a member... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 14 61
No external refs found!