1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.003G075200.1

Sobic.003G075200.1


Description : Unknown function


Gene families : OG_42_0001442 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001442_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G075200.1
Cluster HCAA Clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
A4A49_13205 No alias uncharacterized protein, mitochondrial 0.04 Orthogroups_2024-Update
At5g02050 No alias At5g02050 [Source:UniProtKB/TrEMBL;Acc:Q9LZM6] 0.03 Orthogroups_2024-Update
At5g05990 No alias AT5g05990/K18J17_19 [Source:UniProtKB/TrEMBL;Acc:Q9FI87] 0.03 Orthogroups_2024-Update
Bradi1g42640 No alias Mitochondrial glycoprotein family protein 0.03 Orthogroups_2024-Update
Bradi2g02870 No alias Mitochondrial glycoprotein family protein 0.11 Orthogroups_2024-Update
Brara.C00053.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.J02908.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Cre04.g225600 No alias Mitochondrial glycoprotein family protein 0.01 Orthogroups_2024-Update
GRMZM2G011213 No alias Mitochondrial glycoprotein family protein 0.03 Orthogroups_2024-Update
Glyma.02G251000 No alias Mitochondrial glycoprotein family protein 0.05 Orthogroups_2024-Update
Glyma.18G187800 No alias Mitochondrial glycoprotein family protein 0.07 Orthogroups_2024-Update
HORVU3Hr1G011460.1 No alias Unknown function 0.06 Orthogroups_2024-Update
HORVU7Hr1G046980.1 No alias Unknown function 0.12 Orthogroups_2024-Update
Kfl00154_0170 kfl00154_0170_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os01g05010 No alias mitochondrial glycoprotein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g38210 No alias mitochondrial glycoprotein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g22070 No alias mitochondrial glycoprotein, putative, expressed 0.08 Orthogroups_2024-Update
Mp1g21440.1 No alias no hits & (original description: none) 0.07 Orthogroups_2024-Update
PSME_00000622-RA No alias (at5g02050 : 166.0) Mitochondrial glycoprotein family... 0.04 Orthogroups_2024-Update
Potri.006G090700 No alias Mitochondrial glycoprotein family protein 0.1 Orthogroups_2024-Update
Potri.010G198600 No alias Mitochondrial glycoprotein family protein 0.06 Orthogroups_2024-Update
Pp1s118_113V6 No alias contains ESTs AU108164(C53469),C27934(C53469) similar to... 0.05 Orthogroups_2024-Update
Seita.4G141500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G099100.1 No alias Unknown function 0.17 Orthogroups_2024-Update
Sopen03g027200 No alias Mitochondrial glycoprotein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003428 MAM33 69 264
No external refs found!