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  5. Sobic.003G117100.1

Sobic.003G117100.1


Description : pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex


Gene families : OG_42_0004273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004273_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G117100.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
81986 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
A4A49_39430 No alias haca ribonucleoprotein complex subunit 4 0.08 Orthogroups_2024-Update
At3g57150 No alias Uncharacterized protein At3g57150 (Fragment)... 0.05 Orthogroups_2024-Update
Bradi2g04950 No alias homologue of NAP57 0.09 Orthogroups_2024-Update
Bradi4g38770 No alias homologue of NAP57 0.04 Orthogroups_2024-Update
Brara.G01728.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.06 Orthogroups_2024-Update
Cre03.g172950 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
GRMZM2G044128 No alias homologue of NAP57 0.05 Orthogroups_2024-Update
GRMZM2G172956 No alias homologue of NAP57 0.08 Orthogroups_2024-Update
Glyma.15G056100 No alias homologue of NAP57 0.05 Orthogroups_2024-Update
HORVU2Hr1G027370.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.1 Orthogroups_2024-Update
HORVU2Hr1G027400.5 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.08 Orthogroups_2024-Update
Kfl00043_0130 kfl00043_0130_v1.1 (at3g57150 : 649.0) Encodes a putative pseudouridine... 0.03 Orthogroups_2024-Update
LOC_Os03g25450 No alias h/ACA ribonucleoprotein complex subunit 4, putative, expressed 0.03 Orthogroups_2024-Update
Potri.006G044100 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
Potri.016G041200 No alias homologue of NAP57 0.07 Orthogroups_2024-Update
Seita.2G404800.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.16 Orthogroups_2024-Update
Seita.5G057000.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.21 Orthogroups_2024-Update
Solyc02g081810 No alias H/ACA ribonucleoprotein complex subunit 4 (AHRD V3.3 ***... 0.12 Orthogroups_2024-Update
Sopen02g026410 No alias DKCLD (NUC011) domain 0.09 Orthogroups_2024-Update
evm.model.contig_497.4 No alias (at3g57150 : 559.0) Encodes a putative pseudouridine... 0.02 Orthogroups_2024-Update
evm.model.tig00000553.10 No alias (at3g57150 : 635.0) Encodes a putative pseudouridine... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012960 Dyskerin-like 63 120
IPR032819 TruB_C 241 307
IPR002501 PsdUridine_synth_N 124 240
IPR002478 PUA 311 383
No external refs found!