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  5. Sobic.003G124600.1

Sobic.003G124600.1


Description : RNA helicase *(Prp2)


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G124600.1
Cluster HCAA Clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Brara.H02028.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre03.g182950 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Cre12.g520150 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
GRMZM2G305060 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Glyma.13G232900 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Potri.010G172500 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Pp1s312_57V6 No alias deah-box rna helicase 0.03 Orthogroups_2024-Update
Solyc07g039550 No alias RNA helicase DEAH-box21 0.02 Orthogroups_2024-Update
Solyc09g097820 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Sopen09g035760 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.03 Orthogroups_2024-Update
evm.model.contig_524.2 No alias (at3g62310 : 724.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008962 phosphatidylglycerophosphatase activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0010564 regulation of cell cycle process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0032465 regulation of cytokinesis IEP Predicted GO
BP GO:0032954 regulation of cytokinetic process IEP Predicted GO
BP GO:0032955 regulation of division septum assembly IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
BP GO:0051302 regulation of cell division IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901891 regulation of cell septum assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 609 736
IPR007502 Helicase-assoc_dom 798 872
IPR011709 DUF1605 946 1023
No external refs found!