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  5. Sobic.003G128400.1

Sobic.003G128400.1


Description : non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex


Gene families : OG_42_0002113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G128400.1
Cluster HCAA Clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Bradi1g62720 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.1 Orthogroups_2024-Update
Bradi2g10278 No alias CLP protease R subunit 4 0.15 Orthogroups_2024-Update
Brara.A01840.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 Orthogroups_2024-Update
Brara.C04533.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 Orthogroups_2024-Update
Brara.H02844.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 Orthogroups_2024-Update
Cre03.g204350 No alias CLP protease R subunit 4 0.02 Orthogroups_2024-Update
Cre07.g331500 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.02 Orthogroups_2024-Update
GRMZM2G030072 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.05 Orthogroups_2024-Update
GRMZM5G819807 No alias CLP protease R subunit 4 0.03 Orthogroups_2024-Update
Glyma.03G235800 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.03 Orthogroups_2024-Update
HORVU3Hr1G038610.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 Orthogroups_2024-Update
LOC_Os01g16530 No alias OsClp1 - Putative Clp protease homologue, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g22430 No alias OsClp5 - Putative Clp protease homologue, expressed 0.03 Orthogroups_2024-Update
Potri.003G083300 No alias CLP protease R subunit 4 0.03 Orthogroups_2024-Update
Seita.5G044900.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.13 Orthogroups_2024-Update
Seita.9G407400.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.12 Orthogroups_2024-Update
Solyc08g077890 No alias ATP-dependent Clp protease proteolytic subunit (AHRD... 0.03 Orthogroups_2024-Update
Sopen08g026400 No alias Clp protease 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 91 272
No external refs found!