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  5. Sobic.003G128800.1

Sobic.003G128800.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G128800.1
Cluster HCAA Clusters: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
102623 No alias expansin A15 0.02 Orthogroups_2024-Update
409954 No alias expansin A8 0.02 Orthogroups_2024-Update
419575 No alias expansin A16 0.02 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.03 Orthogroups_2024-Update
Bradi2g53580 No alias expansin A8 0.04 Orthogroups_2024-Update
GRMZM2G339122 No alias expansin A1 0.05 Orthogroups_2024-Update
Glyma.02G235900 No alias expansin A8 0.03 Orthogroups_2024-Update
Glyma.09G236200 No alias expansin A1 0.03 Orthogroups_2024-Update
Glyma.11G139100 No alias expansin A4 0.02 Orthogroups_2024-Update
Glyma.12G150900 No alias expansin 12 0.03 Orthogroups_2024-Update
Glyma.18G260900 No alias expansin A1 0.07 Orthogroups_2024-Update
LOC_Os02g16800 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10434805g0030 No alias (at2g40610 : 365.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_30127g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Mp3g03880.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Pp1s178_63V6 No alias alpha-expansin 1 0.05 Orthogroups_2024-Update
Pp1s25_294V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Seita.5G363100.1 No alias alpha-class expansin 0.05 Orthogroups_2024-Update
Seita.7G029300.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sopen04g035500 No alias Pollen allergen 0.03 Orthogroups_2024-Update
Sopen09g005600 No alias Pollen allergen 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 58 142
IPR007117 Expansin_CBD 153 230
No external refs found!